John M. Higgins, MD

Higgins Lab

“Developing mathematical descriptions of complex human disease phenotypes and how they change over time...”


John M. Higgins, MD

Associate Professor of Systems Biology, Harvard Medical School
Assistant Pathologist, Massachusetts General Hospital

Center for Systems Biology
Massachusetts General Hospital
Richard B. Simches Research Center
185 Cambridge Street
Room 5.222
Boston, MA 02114
Phone: 617-643-6129
Fax: 617-643-6133


I study the dynamics of human pathophysiologic processes by developing mathematical descriptions of complex human disease phenotypes and how they change over time. The research combines medical insight, dynamical systems theory, and experiments utilizing microfluidics, video processing, flow cytometry, simulation, and large-scale analysis of medical databases in pursuit of two goals: (1) advancing fundamental understanding of human pathophysiologic process and their dynamics, and (2) improving patient diagnosis, monitoring, and treatment.

Pathophysiology may be described at the molecular, cellular, tissue and organismal levels and may show clinically significant variation over time scales ranging from less than a second to more than a decade. Using clinical laboratory data and experiments with clinical specimens, we can develop detailed descriptions of pathophysiologic states in terms of clinically relevant and measurable quantities. We can then propose mathematical models describing the interrelationships between these state variables and how those relationships change when perturbed by disease. Models must be consistent with both existing basic research and clinical experience, and once validated will enable the estimation of dynamic parameters. Personalized estimates of parameters often quantify unmeasurable aspects of biological processes, revealing new insight into pathophysiology and providing opportunities for novel approaches to diagnosis and patient monitoring. Recent work has focused on population dynamics of cell characteristics in anemia and inflammatory states, blood flow in sickle cell disease, and immunologic response to transfusion.

Group Members

Research Projects

I am developing a mathematical model of vaso-occlusion in sickle cell disease by combining theory from fluid mechanics with experiments using patient samples flowing in microfluidic devices under controlled conditions.  With collaborators, I have developed a way to stop and start the flow of sickle cell blood in a network of silicone polymer channels by changing only the oxygen concentration.  I hope to understand the physical determinants of in vitro vaso-occlusion and to explore their relevance to clinical management and intervention.

I am also developing a probabilistic model of alloimmunization following red blood cell transfusion.  By analyzing several large-scale patient databases, my collaborators and I have identified robust patterns of immunologic response which suggest that only a subset of transfusion recipients are at risk of alloimmunization.  We hope to determine if these patterns have implications for human immune response in general and to apply any insights to the improvement of blood bank practices.

Selected Publications

View a complete list of Dr. Higgins' publications on the Center for Systems Biology website.

Modulation of red blood cell population dynamics is a fundamental homeostatic response to disease. Patel HH, Patel HR, Higgins JM. Am J Hematol. 2015 May;90(5):422-8.

Single-cell measurement of red blood cell oxygen affinity. Di Caprio G, Stokes C, Higgins JM, Schonbrun E. Proc Natl Acad Sci U S A. 2015 Aug 11;112(32):9984-9.

A biophysical indicator of vaso-occlusive risk in sickle cell disease. Wood DK, Soriano A, Mahadevan L, Higgins JM, Bhatia SN. Sci Transl Med. 2012 Feb 29;4(123):123ra26.

Physiological and pathological population dynamics of circulating human red blood cells.

Higgins JM, Mahadevan L. Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20587-92.

Stochastic modeling of human RBC alloimmunization: evidence for a distinct population of immunologic responders. Higgins JM, Sloan SR. Blood. 2008 Sep 15;112(6):2546-53.



Contact Us

Higgins Laboratory

Massachusetts General Hospital

185 Cambridge Street, Suite 5.210Richard B. Simches Research Center Boston, MA 02114
  • Phone: 617-643-6129
  • Fax: 617-643-6133


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